Index

A

aesop.aesop (module)

Alascan (class in aesop.aesop)

B

batchAPBS() (in module aesop.aesop) batchCalcDX() (in module aesop.aesop)

batchCoulomb() (in module aesop.aesop)

C

calcAPBS() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) calcAPBS_parallel() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) calcCoulomb() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) calcCoulomb_parallel() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) calcDX() (in module aesop.aesop) calcESD() (aesop.aesop.ElecSimilarity method)

calcESI() (aesop.aesop.Alascan method) (aesop.aesop.ElecSimilarity method) centerPDB() (aesop.aesop.ElecSimilarity method) checkerrors() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method) checkwarnings() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method) complete_structure() (in module aesop.aesop)

D

ddGa_rel() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) dGsolv_rel() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method)

DirectedMutagenesis (class in aesop.aesop)

E

ElecSimilarity (class in aesop.aesop) execAPBS() (in module aesop.aesop)

execCoulomb() (in module aesop.aesop) execPDB2PQR() (in module aesop.aesop)

F

find_grid() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method)

G

genDirs() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) genDX() (aesop.aesop.ElecSimilarity method) genDX_parallel() (aesop.aesop.ElecSimilarity method) genMutid() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) genParent() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method)

genPDB() (aesop.aesop.DirectedMutagenesis method) genPQR() (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method) genTruncatedPQR() (aesop.aesop.Alascan method) getMutids() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) Grid (class in aesop.aesop)

I

initializeGrid() (aesop.aesop.ElecSimilarity method)

M

minimize_cg() (in module aesop.aesop) minimPDB() (aesop.aesop.ElecSimilarity method)

mutatePDB() (in module aesop.aesop) mutatePQR() (aesop.aesop.ElecSimilarity method) (in module aesop.aesop)

P

plotDend() (in module aesop.aesop) plotESD() (in module aesop.aesop) plotESD_interactive() (in module aesop.aesop) plotNetwork() (in module aesop.aesop)

plotNetwork_interactive() (in module aesop.aesop) plotScan() (in module aesop.aesop) plotScan_interactive() (in module aesop.aesop)

R

re (aesop.aesop.Grid attribute) readDX() (aesop.aesop.Grid method) run() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method)

run_parallel() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method) runProcess() (in module aesop.aesop)

S

set_grid() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) summary() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method)

superpose() (in module aesop.aesop) superposePDB() (aesop.aesop.ElecSimilarity method)

V

viewLogs() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method)

W

writeDX() (aesop.aesop.Grid method) writeLogs() (aesop.aesop.Alascan method) (aesop.aesop.DirectedMutagenesis method) (aesop.aesop.ElecSimilarity method)

writePDB() (in module aesop.aesop)